PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC18209_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 412aa MW: 43516.9 Da PI: 9.1573

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC18209_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.9e-38	92	151	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ RrC18209_p1 92 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 151 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	79	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	94	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MVFSSFPTYP DSSNWQQQHQ PITSTVGFTG DNNISQQFLP HHPLPPQPQQ TPPPLHLSGN 60 GGGGGGPGGP GGSIRPGSMA ERARIANIPM PETALKCPRC DSTNTKFCYF NNYSLTQPRH 120 FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSSGGGGSS SSGNSKSQDS TTSNDQYHHR 180 AMGNNQMGPP PSSTSLSSLL SSYNAGLIPG HDHNMSSNNH VLGLGSSLPP LKLMPPLDFT 240 DNFTLQYGTV SAPSYHVGGG SSGGGGAASL LTGFDQWRFP APHHQLPLLG GLDSSSSSSG 300 LYPFDHQNQT GLEPQNPGYG LVTGSGQYRP KNIFHNLVSS SVSSAMVTAT ASQLASVKME 360 DSNNQLNMSR QLFGTEQQLW NIHGTAASTA AATTSSWSDV SNNFSSSSTS NI

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MVFSSFPTYP DSSNWQQQHQ PITSTVGFTG DNNISQQFLP HHPLPPQPQQ TPPPLHLSGN  60
GGGGGGPGGP GGSIRPGSMA ERARIANIPM PETALKCPRC DSTNTKFCYF NNYSLTQPRH  120
FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSSGGGGSS SSGNSKSQDS TTSNDQYHHR  180
AMGNNQMGPP PSSTSLSSLL SSYNAGLIPG HDHNMSSNNH VLGLGSSLPP LKLMPPLDFT  240
DNFTLQYGTV SAPSYHVGGG SSGGGGAASL LTGFDQWRFP APHHQLPLLG GLDSSSSSSG  300
LYPFDHQNQT GLEPQNPGYG LVTGSGQYRP KNIFHNLVSS SVSSAMVTAT ASQLASVKME  360
DSNNQLNMSR QLFGTEQQLW NIHGTAASTA AATTSSWSDV SNNFSSSSTS NI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241023	0.0	AC241023.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039N20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473035.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-163	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A078J0Z8	0.0	A0A078J0Z8_BRANA; BnaA03g54830D protein
STRING	Bra028872.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-135	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]