PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1756_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 461aa MW: 51660.2 Da PI: 6.7389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.3 | 1.3e-48 | 26 | 179 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............................kvkaeekewyfFskrdkkyatg 71 l+pGfrFhPtd+elv++yLk+kv gk++++ ++i +vdiyk+ePwdL +k++++ewyf++ dkky +g RrC1756_p2 26 LAPGFRFHPTDDELVSYYLKRKVLGKPVRF-DAIGDVDIYKHEPWDLAVfwassklrlltqfwrkdmkfvdaclafsWLKTRDQEWYFYCALDKKYGNG 123 579************************999.99**************856899**************99999998886777999*************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r nrat+ gyWkatgkd+e+ s + +l g+kktLvf++grap+g +t+Wvmheyrl RrC1756_p2 124 ARMNRATNLGYWKATGKDREIRS-DVQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 179 ***********************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-54 | 19 | 71 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.815 | 26 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 28 | 179 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-54 | 100 | 204 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MGRESVTAVS SPPTATATAT AVATALAPGF RFHPTDDELV SYYLKRKVLG KPVRFDAIGD 60 VDIYKHEPWD LAVFWASSKL RLLTQFWRKD MKFVDACLAF SWLKTRDQEW YFYCALDKKY 120 GNGARMNRAT NLGYWKATGK DREIRSDVQL LGMKKTLVFH SGRAPDGLRT NWVMHEYRLV 180 DCETENNGNS VQDAYVLCRI FHKNNIGPPS GNRYAPFMEE EWAGDGVALI PGVNVSVKAE 240 PLPVANGNNH IDQAIQSGSK DLININEPPR EPAPMDIELN HHENAFKPQE NNNNSNHCDD 300 EGELPPAVCV LNKEAPLPLV QYKRRRQNES SNNDSSRTPE DYCSSTTTTV DNTPTLISSS 360 PAAAAATNSA ISALLEFSLM GISKKKENLQ QTVRPHKEAT TLKEKLNDLQ KEIEKMSDER 420 KTFKLEMMGA EAMISILQSR IDALRQENDE LKKNSSPANG H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-41 | 25 | 205 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 25 | 205 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-41 | 25 | 205 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-41 | 25 | 205 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966752 | 0.0 | KC966752.1 Brassica napus NAC transcription factor 50 (NAC50.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492857.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like isoform X1 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A397ZF44 | 0.0 | A0A397ZF44_BRACM; Uncharacterized protein | ||||
STRING | Bra001365.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 0.0 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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