PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1657_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 364aa MW: 38721.5 Da PI: 8.2396

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1657_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.2	5.4e-36	67	126	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt GGalr vP Ggg+r+nk+++ RrC1657_p4 67 ETSLKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTCGGALRSVPAGGGCRRNKRTK 126 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-36	50	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-30	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTTTVGFTGN NISQQFLPHH PLPPQSQQTP PPLHHNGSGE SGGGPDGLIR PGSMAERARL 60 ANIQLPETSL KCPRCDSTNT KFCYFNNYSL TQPRHFCKSC RRYWTCGGAL RSVPAGGGCR 120 RNKRTKNSGC GGGGGSSSSG NSKSQDSTTS NDQYHDLAVA NNQMGPTSST TSLSSLLSSY 180 NAGLIPGHDH SNNVLGLGSS YLPPLKLMPP LDFTDNSSLQ YGAVSVPSYH MGGGSSGGEA 240 SALLTGFDQW RFPITNQQPP LLGGLDNSSS SGFHQFDHHS QTGMHQQDSG QYRPKNIFHN 300 LVPLASVKME DSNNQLSMSR QIFGNEQHLW NIHGAATSTA AAAPTTSSWS DASNNFSSSS 360 TSNI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTTTVGFTGN NISQQFLPHH PLPPQSQQTP PPLHHNGSGE SGGGPDGLIR PGSMAERARL  60
ANIQLPETSL KCPRCDSTNT KFCYFNNYSL TQPRHFCKSC RRYWTCGGAL RSVPAGGGCR  120
RNKRTKNSGC GGGGGSSSSG NSKSQDSTTS NDQYHDLAVA NNQMGPTSST TSLSSLLSSY  180
NAGLIPGHDH SNNVLGLGSS YLPPLKLMPP LDFTDNSSLQ YGAVSVPSYH MGGGSSGGEA  240
SALLTGFDQW RFPITNQQPP LLGGLDNSSS SGFHQFDHHS QTGMHQQDSG QYRPKNIFHN  300
LVPLASVKME DSNNQLSMSR QIFGNEQHLW NIHGAATSTA AAAPTTSSWS DASNNFSSSS  360
TSNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444399.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-119	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A3P6EEB1	1e-140	A0A3P6EEB1_BRAOL; Uncharacterized protein
STRING	Bo9g183590.1	1e-138	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-111	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]