PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC156_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | VOZ | ||||||||
Protein Properties | Length: 706aa MW: 79032 Da PI: 6.8382 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 415.1 | 1.2e-127 | 223 | 436 | 2 | 215 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsll 101 ppsaflgpkcalwdctrpa+gs+w+ dycs +h +lalne++pgt+pvlrp+gi+lkd+ll++al+ak+ gk+vgip+cega+++k+pwnaaelf+l+l+ RrC156_p5 223 PPSAFLGPKCALWDCTRPAHGSDWYMDYCSDYHGNLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTLGKNVGIPVCEGAVNTKCPWNAAELFHLELV 322 7*************************************************************************************************** PP VOZ 102 egetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvs 201 egetirewlffdkprra++sgnrkqrslpdy+grgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+da+alyrlelkl+++kks+kg+v+ RrC156_p5 323 EGETIREWLFFDKPRRAYDSGNRKQRSLPDYNGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKLTNGKKSPKGRVA 422 **************************************************************************************************** PP VOZ 202 kdsladlqkklgrl 215 kd+ladlqkk+ ++ RrC156_p5 423 KDPLADLQKKMEKM 436 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12999 | 6.6E-29 | 510 | 615 | IPR028146 | Glucosidase II beta subunit, N-terminal |
Gene3D | G3DSA:4.10.400.10 | 5.9E-4 | 535 | 575 | IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MSNYPKMTCV SSSHQNLMEK LMQLQERFSH LQAARREGRL NDHALLEAQI SQNLREWQAE 60 LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSTLK EHAAPPKPDA FDQSLCSPGH 120 LEWTAEPFDQ TSFDVNFLSG FEDDVNNSET HGQQLHCAFQ EFDPSINTAP DFHAQKLSHL 180 DITSQLDYHL SEVRQEFNNT PSSVKLDVSD ESEFTTPSSV RVPPSAFLGP KCALWDCTRP 240 AHGSDWYMDY CSDYHGNLAL NEDSPGTAPV LRPGGISLKD NLLIDALRAK TLGKNVGIPV 300 CEGAVNTKCP WNAAELFHLE LVEGETIREW LFFDKPRRAY DSGNRKQRSL PDYNGRGWHE 360 SRKQLMKEQE GQKRSYYMDP QPPGPFEWHL FEYQINESDA CALYRLELKL TNGKKSPKGR 420 VAKDPLADLQ KKMEKMGQLT PEVASDKPSP PTKSRAKAAK GVKAATGNLT QETTVPATAA 480 STFSKAALAN MSRNNIKLLQ CVSSFLFAVV SVNCSTTPLV GVHPLDEKYF ESDIIRCKDG 540 SKSFPRDRLN DNFCDCLDGT DEPGTSACPN GKFYCRNTGS SPKFVYSSRV NDRICDCCDG 600 SDEYESSITC PNTCIMGGNV NYVYKPRTYR KSIDRQLGSV TTDPNRSLTI ANLQDIVKNL 660 QGMKLVFAVQ MVLIGFLVIL WMLRRRARSS KRRRYLLKSV HPNRSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f0e_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5h9o_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5h9o_D | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5ied_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5iee_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5ief_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
5ieg_B | 1e-29 | 529 | 614 | 2 | 87 | Glucosidase 2 subunit beta |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 682 | 688 | LRRRARS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00018 | PBM | Transfer from AT2G42400 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB125257 | 0.0 | AB125257.1 Arabidopsis thaliana AtVOZ2 mRNA for Transcription factor AtVOZ2, complete cds. | |||
GenBank | AF361831 | 0.0 | AF361831.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds. | |||
GenBank | AY078048 | 0.0 | AY078048.1 Arabidopsis thaliana At2g42400/MHK10.12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433046.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Refseq | XP_018433047.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A078JFQ3 | 0.0 | A0A078JFQ3_BRANA; BnaC04g52750D protein | ||||
STRING | Bo4g015980.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
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