PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15577_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 351aa    MW: 38060.8 Da    PI: 7.9683
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15577_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-3958118262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  RrC15577_p1  58 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 118
                  7899******************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2751110IPR003851Zinc finger, Dof-type
PfamPF027014.7E-3359116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.53762116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVGRIAVCDF DKQEMVVKPL EEIVTNTCPK PQSAAHTQQP PSVGAGGGGA ERKARPEKDQ  60
AINCPRCNST NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS  120
SVSSSSDINT NHSDSTQPAT KKHHSDHHHL MSISQQRLTG QNPKFFETTQ QDLNLGFPPH  180
GLIRSNFTDL IHNIGNNNIK STNNPLLSSS CSSTSAMATS SLDLIRNNNS NNGSSSFMGF  240
PVQNQDPTSG GFSMQDHYKP CNSNTTLLGF SLDHHHNNGF HGGFQEGEEA AGDDVNGRHL  300
FPFEDLKLPV SSSSATINVD INDNQKRASG GDASATSGGY WTGMLSGGSW C
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3580880.0DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469941.10.0PREDICTED: dof zinc finger protein DOF4.6-like
SwissprotQ8LAP81e-170DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A3P5ZFK10.0A0A3P5ZFK1_BRACM; Uncharacterized protein
STRINGBo1g037500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-131Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]