PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15577_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 38060.8 Da PI: 7.9683 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 58 | 118 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ RrC15577_p1 58 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 118 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 51 | 110 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-33 | 59 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 62 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 64 | 100 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVGRIAVCDF DKQEMVVKPL EEIVTNTCPK PQSAAHTQQP PSVGAGGGGA ERKARPEKDQ 60 AINCPRCNST NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS 120 SVSSSSDINT NHSDSTQPAT KKHHSDHHHL MSISQQRLTG QNPKFFETTQ QDLNLGFPPH 180 GLIRSNFTDL IHNIGNNNIK STNNPLLSSS CSSTSAMATS SLDLIRNNNS NNGSSSFMGF 240 PVQNQDPTSG GFSMQDHYKP CNSNTTLLGF SLDHHHNNGF HGGFQEGEEA AGDDVNGRHL 300 FPFEDLKLPV SSSSATINVD INDNQKRASG GDASATSGGY WTGMLSGGSW C |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ358088 | 0.0 | DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469941.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Swissprot | Q8LAP8 | 1e-170 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A3P5ZFK1 | 0.0 | A0A3P5ZFK1_BRACM; Uncharacterized protein | ||||
STRING | Bo1g037500.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-131 | Dof family protein |
Publications ? help Back to Top | |||
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