PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC15577_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 351aa MW: 38060.8 Da PI: 7.9683

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC15577_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	58	118	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ RrC15577_p1 58 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 118 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	51	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	59	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MVGRIAVCDF DKQEMVVKPL EEIVTNTCPK PQSAAHTQQP PSVGAGGGGA ERKARPEKDQ 60 AINCPRCNST NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS 120 SVSSSSDINT NHSDSTQPAT KKHHSDHHHL MSISQQRLTG QNPKFFETTQ QDLNLGFPPH 180 GLIRSNFTDL IHNIGNNNIK STNNPLLSSS CSSTSAMATS SLDLIRNNNS NNGSSSFMGF 240 PVQNQDPTSG GFSMQDHYKP CNSNTTLLGF SLDHHHNNGF HGGFQEGEEA AGDDVNGRHL 300 FPFEDLKLPV SSSSATINVD INDNQKRASG GDASATSGGY WTGMLSGGSW C

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MVGRIAVCDF DKQEMVVKPL EEIVTNTCPK PQSAAHTQQP PSVGAGGGGA ERKARPEKDQ  60
AINCPRCNST NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS  120
SVSSSSDINT NHSDSTQPAT KKHHSDHHHL MSISQQRLTG QNPKFFETTQ QDLNLGFPPH  180
GLIRSNFTDL IHNIGNNNIK STNNPLLSSS CSSTSAMATS SLDLIRNNNS NNGSSSFMGF  240
PVQNQDPTSG GFSMQDHYKP CNSNTTLLGF SLDHHHNNGF HGGFQEGEEA AGDDVNGRHL  300
FPFEDLKLPV SSSSATINVD INDNQKRASG GDASATSGGY WTGMLSGGSW C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ358088	0.0	DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469941.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-170	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A3P5ZFK1	0.0	A0A3P5ZFK1_BRACM; Uncharacterized protein
STRING	Bo1g037500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-131	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]