PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1489_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 275aa MW: 31568.8 Da PI: 9.9707

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1489_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.6	5.9e-10	146	252	1	81
EEEE-..-HHHHT.T-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE.......EEETTE......EEE-TTHHHHH CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliy.....rkksgr......yvltkGWkeFv 69 f+k+l+ sdv+ + +r+ +p + ++++ ggk +++ l d++++ W++ ++ + + + yvl +GW++ v RrC1489_p8 146 FEKTLSVSDVNPNqSRFLIPFQKLKRNdfltreessfleqeegnkGGK--PGVEAFLVDQRSEAWSLVFKRwvmkkKES--SekgtlnYVLNRGWNDIV 240 89999999999887999*****999999999999999887775444..3589****99999995558753333..2468999******* PP HHHT--TT-EEE CS B3 70 kangLkegDfvv 81 k+n+Lk++D + RrC1489_p8 241 KENKLKAKDKIS 252 ******9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	5.0E-35	133	242	IPR005508	B3 domain-containing protein
Gene3D	G3DSA:2.40.330.10	2.0E-21	138	269	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-17	142	267	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.62E-10	146	264	No hit	No description
PROSITE profile	PS50863	10.532	166	270	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGGEDDHYLS RMKKDWPNIR DKVTKALEEA LLRKSKSPSP SRIIKFDLNE PPPPDADDEE 60 QINEAEGRDH KVSSRDSSRF CCNIDLNKSP REEPPNHDHN ITKNLLSPNP GKRRLKRKGR 120 GSGRLDKAKK QRLKDALDVE DAKLVFEKTL SVSDVNPNQS RFLIPFQKLK RNDFLTREES 180 SFLEQEEGNK GGKPGVEAFL VDQRSEAWSL VFKRWVMKKK ESSEKGTLNY VLNRGWNDIV 240 KENKLKAKDK ISLWSFRCDG VLCFALVTHP PTIST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471263.1	0.0	PREDICTED: putative B3 domain-containing protein At3g49610
Swissprot	Q9FFM6	5e-42	Y5578_ARATH; Putative B3 domain-containing protein At5g35780
TrEMBL	A0A078F6L6	1e-132	A0A078F6L6_BRANA; BnaC05g03530D protein
TrEMBL	A0A3P6FF10	1e-132	A0A3P6FF10_BRAOL; Uncharacterized protein
STRING	Bra015425.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM273	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	4e-35	B3 family protein