PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14541_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 27213.1 Da PI: 5.2925 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 16 | 68 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le F+++ + +++ +LA++lgL+ rqV +WFqN+Ra++k RrC14541_p1 16 QRRFSDEQIKSLEMRFKSETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 68 579*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.1e-39 | 15 | 105 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++rr+s+eq+k+LE+ F++e++Lep++Kv+lareLglqprqva+WFqn+RAR+ktkqlE++++ L+++y+ l+++ e+L+ke++ L +el+ RrC14541_p1 15 NQRRFSDEQIKSLEMRFKSETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKTKQLETEFNILRQNYNDLASQFESLKKENQGLVSELH 105 68************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.973 | 10 | 70 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-14 | 13 | 74 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-16 | 15 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.9E-16 | 16 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-13 | 16 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 16 | 76 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.5E-6 | 41 | 50 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 45 | 68 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-6 | 50 | 66 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-13 | 70 | 110 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MTMKKMKKSI HNENNQRRFS DEQIKSLEMR FKSETRLEPR KKVQLARELG LQPRQVAIWF 60 QNKRARWKTK QLETEFNILR QNYNDLASQF ESLKKENQGL VSELHILNEE RQTKQDERRH 120 CCDGQGVVTL GSTDHESEKE ENRRSEPEEV RPEMEVYEKS RHDDDDGYNN NIKREYFVGF 180 EEEADHLMNI VEPADSCLTS SDDWGGFKSN TNLLDQSSSN YPWWDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481377.1 | 1e-169 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 1e-124 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A3P6CDA9 | 1e-137 | A0A3P6CDA9_BRACM; Uncharacterized protein | ||||
STRING | Bo4g197260.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-111 | homeobox 7 |
Publications ? help Back to Top | |||
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