PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1417_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 340aa    MW: 38342.1 Da    PI: 4.7584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1417_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
       RrC1417_p6 15 KGPWVPEEDDKLTAYIEKNGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.81e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
       RrC1417_p6  68 RGEFSDEEESTIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9131062IPR017930Myb domain
SuperFamilySSF466895.62E-3012109IPR009057Homeodomain-like
SMARTSM007174.0E-121464IPR001005SANT/Myb domain
PfamPF002493.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-231669IPR009057Homeodomain-like
CDDcd001676.34E-101762No hitNo description
PROSITE profilePS5129426.53463117IPR017930Myb domain
SMARTSM007171.0E-1667115IPR001005SANT/Myb domain
PfamPF002495.2E-1668112IPR001005SANT/Myb domain
CDDcd001671.39E-1270113No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWVP EEDDKLTAYI EKNGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FSDEEESTIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM  120
GIDPITHEPR TNDLSPILDV SQMLAAAIGN GQFGNNTFFN NNTAVEDLLK LQLIHKMLQI  180
ITPKTLPNIN SFNTNSLNTK PEPVVDNIKT NPVDPKPKLA AAGQLNAIEP HVFTSQTENE  240
DFMPSFEDVW DCTEDNQLPG LVMVSQENLN YQTGAAMMPD YYGDQLHEVP STGSISVTPE  300
TSGLNYPGMT QQSSGSDVLE DWEKFLDDET TDSCWKSFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-27151174105C-Myb DNA-Binding Domain
1msf_C7e-27151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankAY5502970.0AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136872.10.0PREDICTED: transcription factor MYB39
RefseqXP_013598249.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_013646946.10.0transcription factor MYB39-like
RefseqXP_013741326.10.0transcription factor MYB39-like
RefseqXP_022561351.10.0transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0D3DEP50.0A0A0D3DEP5_BRAOL; Uncharacterized protein
TrEMBLQ2A9680.0Q2A968_BRAOL; Myb family transcription factor
STRINGBo7g105430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39