PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1374_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26195.2 Da PI: 5.0764 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.7e-20 | 68 | 121 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le Fe+++++ ++e++A +lgL+ rqV vWFqNrRa++k+ RrC1374_p5 68 KRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 121 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 122.4 | 2.2e-39 | 67 | 158 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++yd++ +++Le++v +L+e+l+e RrC1374_p5 67 RKRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQYDTVLLGQCHLESQVLKLTEQLSE 158 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.503 | 62 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.01E-18 | 65 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.9E-18 | 65 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-15 | 67 | 123 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 68 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 69 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-5 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-5 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDQTSVLSSQ EYPYTIPTQS ECIIIYQIDG SSSGDGSKQV KRRRKRRSKG SSATNEDDVR 60 AMEGMFRKRK LTDEQVTMLE YSFENEHKLE SGRKEKIAGE LGLDPRQVAV WFQNRRARWK 120 NKKLEEEYAK LKSQYDTVLL GQCHLESQVL KLTEQLSEAQ TEIRKLSERL VQETSTNSSS 180 SSLSVEANYT PIEFEFGPDT NYNIPFYMMD NDYLQNMEYW DGLYV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | KRRRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189258 | 1e-173 | AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459867.1 | 1e-127 | PREDICTED: homeobox-leucine zipper protein ATHB-53-like | ||||
Swissprot | Q9LVR0 | 1e-107 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | A0A078JXM2 | 1e-124 | A0A078JXM2_BRANA; BnaA07g37510D protein | ||||
TrEMBL | M4D6I4 | 1e-124 | M4D6I4_BRARP; Uncharacterized protein | ||||
STRING | Bra012093.1-P | 1e-125 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12602 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 1e-105 | homeobox 53 |
Publications ? help Back to Top | |||
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