PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13542_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 130aa    MW: 14871.8 Da    PI: 7.831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13542_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.6e-1312121196
                  EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 
                  f+k+l+ sdv++++rl+l ++ ae+h                       + ++++d++     e+ l+  ++ ++yvl +GW k+Fv++ gLkeg  +
  RrC13542_p1  12 FLKTLSASDVGSQSRLMLTRSDAETHivshlseenklaieagR---GVRINIRVYDRNTyTDHEFVLKRMNSTRSYVLNGGWgKKFVESRGLKEGQKI 106
                  89*************************9866554444332211...12344555554447888899988999999*******668************* PP

                  EEEE-SSSEE..EEEE CS
           B3  81 vFkldgrsefelvvkv 96 
                   F  ++ +e +l++ +
  RrC13542_p1 107 GFLWNS-DESKLHMYL 121
                  ***655.455566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-1510122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1610128IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-1012119IPR003340B3 DNA binding domain
SMARTSM010192.4E-612125IPR003340B3 DNA binding domain
CDDcd100175.42E-1712123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDFDLNMPPY TFLKTLSASD VGSQSRLMLT RSDAETHIVS HLSEENKLAI EAGRGVRINI  60
RVYDRNTYTD HEFVLKRMNS TRSYVLNGGW GKKFVESRGL KEGQKIGFLW NSDESKLHMY  120
LLSPPADEQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469688.11e-93PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A078GQD62e-52A0A078GQD6_BRANA; BnaA02g18980D protein
TrEMBLA0A398ABQ32e-52A0A398ABQ3_BRACM; Uncharacterized protein
TrEMBLM4CVX72e-52M4CVX7_BRARP; Uncharacterized protein
STRINGBra008374.1-P3e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-21B3 family protein