PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13376_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 370aa MW: 41803.6 Da PI: 7.4443

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13376_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	190	244	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ RrC13376_p1 190 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 244 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.371	187	247	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-17	188	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	189	245	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	190	245	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	194	243	IPR001005	SANT/Myb domain
Pfam	PF14379	3.1E-20	274	321	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDNINFESSN ASQGSRLHLQ PQPPQPFNLQ DVNMNHYNQS SPWTSETFSG YTPYDCTSNQ 60 SFSVQCSSSK PYHALFPPYH HQSSDHPSVD QSQSMVPMQL LQNQYLKHQK SCANDFAATN 120 TSSSSYSLSF DARQDPQELC RRTYSTSNVT QLDFSSSHHQ AKQTHPRLSS PSFSTHGGSM 180 APNCGTVVNK TRIRWTQDLH EKFVECVNRL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ 240 KYRIAKYIPD YQEGKFEKGS CSKELSQLDT KTGVQIKEAL QLQLDVQRHL HEQLEIQRNL 300 QLRIEEQGKQ LKIMIEQQQK TKECLLKSPN AEASLSLSAS DHSPPPFSIQ DAEALMLTTY 360 GDTQFQSKIS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDNINFESSN ASQGSRLHLQ PQPPQPFNLQ DVNMNHYNQS SPWTSETFSG YTPYDCTSNQ  60
SFSVQCSSSK PYHALFPPYH HQSSDHPSVD QSQSMVPMQL LQNQYLKHQK SCANDFAATN  120
TSSSSYSLSF DARQDPQELC RRTYSTSNVT QLDFSSSHHQ AKQTHPRLSS PSFSTHGGSM  180
APNCGTVVNK TRIRWTQDLH EKFVECVNRL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ  240
KYRIAKYIPD YQEGKFEKGS CSKELSQLDT KTGVQIKEAL QLQLDVQRHL HEQLEIQRNL  300
QLRIEEQGKQ LKIMIEQQQK TKECLLKSPN AEASLSLSAS DHSPPPFSIQ DAEALMLTTY  360
GDTQFQSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468228.1	0.0	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	0.0	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A3P6AKJ9	0.0	A0A3P6AKJ9_BRACM; Uncharacterized protein
STRING	Bra028717.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	0.0	G2-like family protein