PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12281_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 221aa MW: 25190.3 Da PI: 8.0183 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.4 | 2.4e-11 | 191 | 215 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rF++a++qLGGs+ RrC12281_p1 191 KQRRCWSPELHRRFLHALQQLGGSH 215 79*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 189 | 215 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MMVNKMEYAQ KMQRCHEYVE ALKEEQKKIQ VFQRELPLCL ELVTQAIEAC KKELSGTSTT 60 TSSEQCNSEQ TASVCGGPVL EEFIPIKKSN DGEHESPREI EKSDVDSKKS DWLRSAHLWN 120 HSPDPDTTVV AEVAAPKKAR VVEVRPNRNN RCGFQPFQKE TKRVFSEPEP APAATTCSTT 180 GREQQSQTHR KQRRCWSPEL HRRFLHALQQ LGGSHGNFNK D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018457610.1 | 1e-134 | PREDICTED: myb family transcription factor EFM-like isoform X1 | ||||
Swissprot | Q8VZS3 | 5e-76 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | A0A3P6H1A6 | 1e-94 | A0A3P6H1A6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g107160.1 | 3e-94 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 2e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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