PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1067_p9
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 385aa    MW: 43011.5 Da    PI: 9.8762
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1067_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.5e-10101141545
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                 k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  RrC1067_p9 101 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 141
                 7789************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-894144No hitNo description
SMARTSM003385.7E-797160IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.43899143IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-7101144No hitNo description
PfamPF001708.1E-7101141IPR004827Basic-leucine zipper domain
PROSITE patternPS000360104119IPR004827Basic-leucine zipper domain
PfamPF141441.8E-34183258IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
VVKTTSRRLK LRIVSPISDN LFTPTRRDFN LFQLSQWFTG CSLSIHIGCF EVNMADTSSR  60
TDASTDGDTD PRDMGSERGQ GMQLAAASDS SGRSKDKLDQ KTVRRLAQNR EAARKSRLRK  120
KAYVQQLENS RLKLTQLEQE LQRARQQGVF ISSSGDQAHS TGGNGALAFD AEHSRWLEEK  180
NKQMNELRSA LNAHAGDAEL RIIVDGVMSH YEELFRIKSN AAKNDVFHLL SGMWKTPAER  240
CFLWLGGFRS SELLKLLANQ LEPMTERQVM GINSLQQTSQ QAEDALSQGM ESLQQSLADT  300
LSSGTLGSSS SDNVASYMGQ MAMAMGQLGT LEGFIRQADN LRLQTLQQMI RVLTTRQSAR  360
AFLAIHDYSS RLRALSSLWL ARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493455.10.0PREDICTED: transcription factor TGA6-like
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A3N6U0310.0A0A3N6U031_BRACR; Uncharacterized protein
STRINGBra001443.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6