PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G242100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 632aa MW: 70404.1 Da PI: 5.0248 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.3e-14 | 403 | 450 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Prupe.8G242100.1.p 403 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 450 5899***********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.3E-45 | 10 | 173 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.638 | 400 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-19 | 402 | 463 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-12 | 403 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.90E-15 | 404 | 454 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-19 | 404 | 467 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-18 | 406 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MAAPPSSSRL RSMLQASVQS VQWTYSLFWQ ICPQQGILVW SDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYDSL SAGETNQPPA RRPCASLSPE DLTESEWFYL MCVSFSFPPG 120 VGLPGKAYAR RQHVWLTGAN EVDSKTFSRA ILAKTVVCIP LLDGVVELGT IERDEEEEDQ 180 EEDEEAESDS EAETGRNGQP VAPGPNPPAV SAPAAEPSEL MQLEMSEDIR LGSPDDASNN 240 LDSDFHLLAV SQSRVNPADQ QRQADSYRAE STRRWPSVQE PLSSGLQPPP QGPLALEELT 300 HDDTHYSETV STILQRQATR WTDSSSTDQV AYSAQSAFIK WTTRVEHHML VPIEGTSQWL 360 LKYILFSVPF LHTKYRDENS PKSHEGDAST RLRKGTPQDE LSANHVMAER RRREKLNERF 420 IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLEARN VQMEDDQRSR SSGEIHRSNS 480 MKELRSGLTV VERTRVGPPG SDKRKLRIVE GSGGAAVAKP KMMEESPPSP PPPPPQSSPT 540 PMVTGTSLEV SIIESDGLLE LQCPYREGLL LDIMQTLREL RIETTVVQSS LNNGFFVAEL 600 RAKVKENVNG KKISITEVKR VINQIIPQSD S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 3e-19 | 10 | 179 | 48 | 222 | Transcription factor MYC3 |
4ywc_A | 3e-19 | 10 | 179 | 48 | 222 | Transcription factor MYC3 |
4ywc_B | 3e-19 | 10 | 179 | 48 | 222 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 408 | 413 | ERRRRE |
2 | 409 | 414 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.7532 | 0.0 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G242100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ464755 | 0.0 | KJ464755.1 Prunus persica cultivar Stark Red Gold bHLH3 (bHLH3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007200710.2 | 0.0 | basic helix-loop-helix protein A | ||||
Swissprot | E3SXU4 | 1e-145 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A251N2N9 | 0.0 | A0A251N2N9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01910 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-122 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G242100.1.p |
Publications ? help Back to Top | |||
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