PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G201000.1.p
Common NamePRUPE_ppa015791mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 380aa    MW: 42814.1 Da    PI: 8.4822
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G201000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-2476119144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  Prupe.7G201000.1.p  76 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 119
                         79***************************************987 PP
2QLQ57.83.3e-20843237
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        +FT++Q+q+L++Q+l+yKy++++  +Pp+Ll+ i++
  Prupe.7G201000.1.p  8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43
                        8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.446843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-14841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.48976120IPR014977WRC domain
PfamPF088791.3E-2077119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP  60
HIGWSCFQMG LGRKVDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV  120
FKTPITTNSN PSSSSTPTTI SSITSKNNPP STSTATFHSL SSSLSSLSSD SHHAQPNHSS  180
YNTNLDHHPF LYHHTSSSRP PGFGLSHQER NTSLLLDSGS YPQASSEYRN RYVYGLKEEV  240
DEHAFFSEPS GSVRDFSGSS SMDDSWQFTP LTMSTCTSSS SKQRSCSALQ SEHSHLQLQS  300
NITPKQQNYY ALGSDMKMDR NEGTQKTIHR FFDEWPLKDK DSWLDLDDKS SNSGSVSNTR  360
LSISTHDFPI FSSRNHNDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G201000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-51AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
GenBankLN6818066e-51LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132566e-51LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204778.20.0growth-regulating factor 1 isoform X3
TrEMBLA0A251NH050.0A0A251NH05_PRUPE; Uncharacterized protein
STRINGEMJ059770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-55growth-regulating factor 5