PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G016700.1.p | ||||||||
Common Name | PRUPE_ppa006434mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 45258.2 Da PI: 8.7205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 135 | 180 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Prupe.7G016700.1.p 135 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 180 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 187 | 230 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ Prupe.7G016700.1.p 187 RRAFSEEEEERLLAAHKLYGNK-WAMIARLFP-GRTDNAVKNHWHV 230 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.108 | 130 | 181 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-15 | 134 | 183 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.68E-28 | 134 | 228 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-16 | 135 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 136 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.19E-14 | 138 | 179 | No hit | No description |
PROSITE profile | PS51294 | 27.25 | 182 | 236 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 186 | 234 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 187 | 229 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 189 | 235 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.42E-8 | 198 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MAPQHLKSDC VGFTRYEDLN FLPPPPVSHQ LSLSNTFVAM VHPHFYSGGQ DHSGTSSEPF 60 SPSSSQRSTK PWGFKPLENG GTRTTDHGDQ YPVLLGIDQK KGMPLSLAGE EADEGRSLAA 120 AGRTGAGGHT KSCARGHWRP AEDSKLKELV AQYGPQNWNL IAEHLDGRSG KSCRLRWFNQ 180 LDPRINRRAF SEEEEERLLA AHKLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKHREQS 240 NVYKRRKPST PQATQLPKEF HHPPVTNFQK NTSSTESTVS ISTIDDTQSA STCTELSLTP 300 STRLPLSFFS KLHPFQQHQN FGSQMGSSSD GRSGKIIGNG NGLCKTGPLE GAMMGVDQSG 360 HQSDSNSEIS GDGSVTTTRT NVSLSGENQN QNLNNNEKIS MSFIDFLGVG MG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-34 | 135 | 235 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G016700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007202167.1 | 0.0 | transcription factor MYB80 | ||||
TrEMBL | M5VQV0 | 0.0 | M5VQV0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03366 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-71 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G016700.1.p |
Entrez Gene | 18770951 |