PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G323100.1.p
Common NamePRUPE_ppa018226mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 525aa    MW: 57512.7 Da    PI: 9.0052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G323100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.9e-0593115123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Prupe.6G323100.1.p  93 FVCEICKKGFQRDQNLQLHRRGH 115
                         89*******************88 PP
2zf-C2H2120.00062169191123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Prupe.6G323100.1.p 169 WKCDKCSKKYAVQSDWKAHSKTC 191
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-492115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-692115No hitNo description
SMARTSM003550.03993115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63793115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355210134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-6164189No hitNo description
SMARTSM00355150169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP  60
PQVKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNNINNG  240
APILQGQVSN SDLISPSSIN NSNKTTNNPS TRSSTTSDQF NHNFDTKIPL SLVPQQPLPM  300
SSKPLNMLPR SLNNNNNNNT SSSSPSPLLF ELSHGHGLIP SSSGHLSATE LLQKAAQMGA  360
TMSSTSPSPS GTTITSMAPS TYGTTTTGGY NVNPFMQHRD HHNVNVSPQL ENSFFGANNY  420
AQMGMYGGLL FDPHQNNGLL KNMEQDNNGN SSKFGLRGTN VSGGDTLTVD FLGIGGSANV  480
NRPEDFHGQQ KQQHDQHQQQ QQQQQDQLGF GGIDDDHLRM QRFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34165236372Zinc finger protein JACKDAW
5b3h_F4e-34165236372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G323100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207116.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLM5WNC70.0M5WNC7_PRUPE; Uncharacterized protein
STRINGEMJ083150.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-101C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]