PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G194400.1.p | ||||||||
Common Name | PRUPE_ppa020862mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 36121.7 Da PI: 6.6314 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.5e-14 | 120 | 171 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr ++P + ++++ + a+i A++++k+L+ Prupe.6G194400.1.p 120 QRMTHIAVERNRRKQMNDYLAALRAMMPAC---YAQRGDQASIIGGAINFVKELE 171 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.31E-12 | 118 | 175 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-17 | 119 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.44 | 119 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-15 | 120 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MTLEAVVLQA DRYSYGFKDF HAVGGGGGGS WSHGFGFGED HQEEKVYTDH HMLNNDVGQQ 60 GFNNPSLEAS MLQSVNDFET NSGPAFNRAF SSTEAPAAST GRRKRRRIQN IKNKEDMETQ 120 RMTHIAVERN RRKQMNDYLA ALRAMMPACY AQRGDQASII GGAINFVKEL EQLLQSLEGH 180 RRTEQQHLNL ASIFSSFFTF PQYSTCLNSH GHGVYNSSVH SNELMAEKQS AIADVEVTMV 240 ESHANVKVLM KKQPKQLLKM VLGLHSLGLM ILHVNVTTAD NMILYTFSVK VEDNSQLTSM 300 NEIAADVYEM VGRIQEEAQL LAQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 108 | GRRKRRRIQ |
2 | 102 | 106 | RKRRR |
3 | 103 | 107 | KRRRI |
4 | 120 | 131 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G194400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689419 | 0.0 | KP689419.1 Prunus pseudocerasus isolate Unigene6324 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208193.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | M5W6L7 | 0.0 | M5W6L7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09392 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G194400.1.p |
Entrez Gene | 18772207 |