PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G119400.1.p
Common NamePRUPE_ppa026571mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21764 Da    PI: 4.4166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G119400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.8e-15953145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k+i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Prupe.6G119400.1.p  9 KKINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 53
                        6899*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-22171IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-22160IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGKKKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKPFIFGHP  60
SAETVIDRFL GEQASCTTDG DDDEGIGPVE GEDGHEDLEA SHDEEDIGSV DAEDSHEDSE  120
AHQEDEAGGD GEKVSVWWDE PIDENLGLHE LKKYKGLLEC LKENVASKLY EMNKREFYTK  180
DYLAMLNSEI GSTSNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G119400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207763.11e-143agamous-like MADS-box protein AGL62
TrEMBLM5W5D81e-142M5W5D8_PRUPE; Uncharacterized protein
STRINGEMJ089621e-143(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-29AGAMOUS-like 62