PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G113100.1.p | ||||||||
Common Name | PRUPE_ppa007860mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 310aa MW: 33741.6 Da PI: 7.3221 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.0005 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Prupe.6G113100.1.p 125 YECKTCNRSFPSFQALGGHRASH 147 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00027 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Prupe.6G113100.1.p 203 HECSICGSEFTSGQALGGHMRRH 225 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.2E-13 | 124 | 149 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.48E-9 | 124 | 147 | No hit | No description |
SMART | SM00355 | 0.06 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 125 | 152 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.48E-9 | 198 | 225 | No hit | No description |
Pfam | PF13912 | 2.0E-11 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.993 | 203 | 230 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEGQEELVLS SDQASQMIMI KGKRTKRPRP LSPNGVVAAG TSSSSSACGG GGAMGGDHEY 60 NYYGNSFTSP TTSGEIYEST EEEEDMANCL ILLAQGDHVT VNPKQIFEQR LEQTSNMGKA 120 GFFVYECKTC NRSFPSFQAL GGHRASHKKP KAMSTEDKKP APAHFIPAST FEEFEDQSKQ 180 FIKYKSSPPP AISSQIGSKP KIHECSICGS EFTSGQALGG HMRRHRAAAA AANNSTNHVA 240 ALPSNIGTST KLQRTVLPLD LNLPAPEDND HHHHQLHHHH QHRDSKFQFV PTQQTTLVFN 300 APALVDCHY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 29 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13592 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G113100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422898.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A251NQE6 | 0.0 | A0A251NQE6_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5WBK2 | 0.0 | M5WBK2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06648 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 4e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G113100.1.p |
Entrez Gene | 18773662 |