PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G243900.1.p | ||||||||
Common Name | PRUPE_ppa021886mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25408.5 Da PI: 9.1536 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 15 | 64 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie++ r vtfskRr g+ KKA+EL +LC+aev v++fs++gk + y+ Prupe.5G243900.1.p 15 KRIEDQDDRLVTFSKRRSGVYKKASELATLCGAEVGVVVFSPSGKPFSYA 64 79******************************************988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-30 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.96 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.98E-33 | 8 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.97E-28 | 8 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-21 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-24 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-21 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-21 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEGRKTKGRQ KIEMKRIEDQ DDRLVTFSKR RSGVYKKASE LATLCGAEVG VVVFSPSGKP 60 FSYANSSIDS IANRFLNGHR HHHQHHDYDH DQNHDNIDDN IMNLDAIDRS RHTIVEAYRQ 120 VRIDEMNKKH NELVSELEVE RERGKALQQR MKAKAKEISS SAEAAGSIRS RSSSSKSQLQ 180 GWWEAPIEEL DLKGLKQLHA SFQHLCNDLR PALTCLNNLN PR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-16 | 8 | 89 | 1 | 82 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G243900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419737.1 | 1e-128 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M5WC39 | 1e-165 | M5WC39_PRUPE; Uncharacterized protein | ||||
STRING | EMJ11327 | 1e-165 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-29 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G243900.1.p |
Entrez Gene | 18776001 |