PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G214400.1.p | ||||||||
Common Name | PRUPE_ppa011971mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 21118.2 Da PI: 4.5222 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 67.1 | 3.3e-21 | 53 | 126 | 12 | 85 |
NF-YB 12 nvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf +y+e++ Prupe.5G214400.1.p 53 TMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFSEYIEEVYS 126 6789*****************************************************************98754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.6E-35 | 9 | 20 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-18 | 53 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.47E-30 | 53 | 175 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-35 | 54 | 173 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEPMDIIGKS KEDASLPKAI VFEFCHRSIL ATSVAIGFGG LSLLLNPWVI FTTMTKIIKE 60 MLPPDVRVAR DAQDLLIECC VEFINLISSE SNEVCSREEK RTIAPEHVLK ALQVLGFSEY 120 IEEVYSAYEQ HKLETMHDVA KSVKWGNGAE MTEEEALAEQ QRMFAEARAR MNGGATAPKQ 180 PDPEQSLES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-29 | 54 | 168 | 21 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13163 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G214400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209646.1 | 1e-105 | protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-85 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | M5WC15 | 1e-138 | M5WC15_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10846 | 1e-139 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 9e-88 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G214400.1.p |
Entrez Gene | 18777223 |
Publications ? help Back to Top | |||
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