PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G210500.1.p | ||||||||
Common Name | PRUPE_ppa003436mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 577aa MW: 63305.4 Da PI: 8.6476 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.8 | 8.4e-18 | 271 | 320 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Prupe.5G210500.1.p 271 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 320 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-24 | 266 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-19 | 268 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.939 | 269 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-15 | 271 | 323 | No hit | No description |
Pfam | PF00010 | 3.2E-15 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-13 | 275 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA 60 KEETSVEIST AEKPVSHAAA AAAQPTSSVE HILPGGIGTY TISHISYFNQ RVPKPEGSPV 120 FTVTQPQASS TDRNVEEHSN CSSYTGSGFT LWEESALKNK GKTGKENLGE RPVGIVRGQW 180 TSSERPAQSS SNNHRNCFSA QSSGQKNISF MDMMKSAAKG STQEDELDDE EEFVLKKETS 240 TTTTTATTPY KGDLRVKVDV KGSDQKANTP RSKHSATEQR RRSKINDRFQ MLRELIPHSD 300 QKRDKASFLL EVIEYIQFLQ EKVNKYEGSY QGWNPDPAKL MPWQRNNPKL RESYCDQSRG 360 MNGGSGPALV FAAKFDEKTT SVSPSIPGSS AQNPVESDTS TETTFKAMDH HPGITSKPMP 420 FPLSMQPNFF TPVRSDGAAV PQLPPRLPSD AENTSQHQSM LCQTVSRATD GAAARDKLKE 480 QELTIEGGRI NISSAYSQGL LNTLTQALQN SGVDLSQASI SVQIELGKRA NSRSPIPKSV 540 VKDNEILSSN QGKRHSRVAS GEDSEHAPKK LKTGRN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G210500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419999.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Swissprot | Q9LEZ3 | 1e-140 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A251PBM0 | 0.0 | A0A251PBM0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12064 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-139 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G210500.1.p |
Entrez Gene | 18777940 |
Publications ? help Back to Top | |||
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