PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 562aa    MW: 61764.7 Da    PI: 4.7622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-11320343427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C+++++tGtCk+ ++CkF+H++
  Prupe.5G158300.1.p 320 ADCSYYLKTGTCKFRSNCKFNHPR 343
                         68********************96 PP
2zf-CCCH30.37e-10389414126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C++++r+  C yG +C+F+H+
  Prupe.5G158300.1.p 389 PGERDCPYYMRNLSCGYGLSCRFNHP 414
                         5789*********************9 PP
3zf-CCCH25.22.9e-08488514127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+ tG Ck+ ++Ck++H++
  Prupe.5G158300.1.p 488 PGQPVCIYFSTTGDCKFKSNCKYHHPK 514
                         5789*********************96 PP
4zf-CCCH18.82.8e-06535559226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++ +G+C+ G+ CkF H+
  Prupe.5G158300.1.p 535 GQNICTQYSSYGICNSGPACKFDHP 559
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-4316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666316344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5317344IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737388416IPR000571Zinc finger, CCCH-type
SMARTSM003560.0067388415IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6390414IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826487515IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5489514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5490516IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6531558IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042533561IPR000571Zinc finger, CCCH-type
SMARTSM003560.003533560IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4535559IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MLPAAAVAAR LLLPVSVSVV YVIYKYWRSG RQTESWVPPN RGNNDDVTPN SGNNGVVPPN  60
SVVRPKSCKN DVVPSDGDLA VVEEILKNDP VFFDKIRTLD PAVLDELLKI DPVALDELLR  120
IDPAVLRDSA ELDPAIIDAI SELSEKEEGD EEADWSCSRP VTESSLVIGV PTNSGNNDVV  180
PSNSGNNDVV PPNSGNNDVV PCPELSDRDL AILEEILKDD PVLLYEIRTH DPAVINELRK  240
FDPAVLREMV LDSAEVDPTI IDAIRKLCLK RKEEDKQEAK GSCSGRETES ENENGNETQS  300
QERDEEISRS RHYPLRPEAA DCSYYLKTGT CKFRSNCKFN HPRTTTKNNQ DHFWSGGRKD  360
GRDGSFNPRS REPFAAPFVE NFMGLPIRPG ERDCPYYMRN LSCGYGLSCR FNHPDPTPAG  420
ESDPPSGYGN GEPASLQGAS SSTAARWSAP RSLNNAPLII PPSQGIPSRN TEHNGYQQQQ  480
VEELPQRPGQ PVCIYFSTTG DCKFKSNCKY HHPKNQTAVS PSCALNDKGL PLRPGQNICT  540
QYSSYGICNS GPACKFDHPS L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419577.10.0zinc finger CCCH domain-containing protein 43 isoform X1
TrEMBLA0A251P9400.0A0A251P940_PRUPE; Uncharacterized protein
STRINGXP_008239400.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3989022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-75C3H family protein