PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G106700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 315aa    MW: 35335.6 Da    PI: 4.7317
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G106700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.3e-30129186258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh
  Prupe.5G106700.1.p 129 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 186
                         79*************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-29114189IPR003657WRKY domain
PROSITE profilePS5081132.627123189IPR003657WRKY domain
SuperFamilySSF1182904.32E-25126189IPR003657WRKY domain
SMARTSM007748.6E-33128188IPR003657WRKY domain
PfamPF031064.9E-25130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MENWDLQAVV RGCNTTANID EAMENSQIPY CFAPLSIEEE DDFFHALPQL FEATAALDEL  60
EELYKPFYPV LQPSAPPVIL ASSMSVPQEA ITVEVPKKLK ESSTVCKKIS RKNQSKRVVK  120
EVRAEELFSD VWAWRKYGQK PIKGSPYPRS YYRCSSSKGC SARKQVERSC SNPETFIITY  180
TAEHNHVHPT RRNSLAGSTR SKFPSSKNKD KCKSSLNSPA TTNLAASIEE DHDVQSASTS  240
TVKEEAQLLL EEDEISHENV MLDVMLSDEI IPSLEDLDRE LEPVMDGWFL DQFSDNFPSP  300
WFNIGHSNTV TGAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18119189877Probable WRKY transcription factor 4
2lex_A1e-18119189877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G106700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0136833e-80GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419020.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLA0A251PA290.0A0A251PA29_PRUPE; Uncharacterized protein
STRINGXP_008239089.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.13e-41WRKY family protein