PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G061400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 281aa    MW: 32751.9 Da    PI: 8.3783
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G061400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-09955153
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        s++kGV+  k +g W A+I   +      k ++lg +  +eeAa a+++a+ kl
  Prupe.5G061400.1.p  9 SRFKGVSLLK-SGNWGARISYmY------KPYWLGAYQMEEEAAIAYDRAAVKL 55
                        789*****99.7******87733......**********************988 PP
2B367.12.6e-21128220185
                         EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                         f+k+lt+ dv++++ + +p++f  ++          g+++++ ++lt++d++grsW++ ++y+++ + +++t+GW +F + n+L+++D v+
  Prupe.5G061400.1.p 128 FQKELTHRDVTNKC-FLIPREFSFQYlpppegiinaGEDEARYVKLTFYDKHGRSWTFGYSYWQSTRNFMFTNGWGHFIRMNNLNQKDLVM 217
                         99***********9.9******9999**********99999************************************************** PP

                         EEE- CS
                  B3  82 Fkld 85 
                         F+ +
  Prupe.5G061400.1.p 218 FY-K 220
                         *9.2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-4954IPR001471AP2/ERF domain
CDDcd000185.63E-14967No hitNo description
SuperFamilySSF541714.71E-13967IPR016177DNA-binding domain
PROSITE profilePS5103213.6691065IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-111065IPR001471AP2/ERF domain
SMARTSM003804.7E-91071IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-22120225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-20125222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-20126226No hitNo description
PROSITE profilePS5086310.814127241IPR003340B3 DNA binding domain
PfamPF023621.8E-18128219IPR003340B3 DNA binding domain
SMARTSM010197.6E-11128231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVLQRGPSSR FKGVSLLKSG NWGARISYMY KPYWLGAYQM EEEAAIAYDR AAVKLQRGDT  60
QLNFHWSKYS AEESIFQSQY STEEILSMLK DKTYSSKLMN FLSRHSSGLG TRTTTFMNEQ  120
GISYHFLFQK ELTHRDVTNK CFLIPREFSF QYLPPPEGII NAGEDEARYV KLTFYDKHGR  180
SWTFGYSYWQ STRNFMFTNG WGHFIRMNNL NQKDLVMFYK CEYEGEVLGR EVYMIDYQRS  240
NGENYVLEHS SGSSTIELEA DCKQKETKKG FKLFGVEING *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G061400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238478.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A251P4J50.0A0A251P4J5_PRUPE; Uncharacterized protein
STRINGXP_008238478.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-47RAV family protein