PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G268600.1.p

Common Name

PRUPE_ppa015049mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 162aa MW: 19103.1 Da PI: 9.4369

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G268600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.9	1.4e-22	39	124	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn+YA+++GFs+r+s+ +k ++g+ +r fvC egkre +k+ ++ + +raetr+gC a++k++ + ++k++v++++ eHnH Prupe.4G268600.1.p 39 KFYNAYAYNIGFSIRRSSCHKF-KSGQLRDRLFVCFTEGKREIDKRV-SNVKYHRAETRCGCLARMKISCHLNEKYRVIEFVYEHNHM 124 6******************9.6777************9988.89999********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-18	39	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MNMDNNCMED GEDLVHLSIR KQLIPVIGME FETEDLAFKF YNAYAYNIGF SIRRSSCHKF 60 KSGQLRDRLF VCFTEGKREI DKRVSNVKYH RAETRCGCLA RMKISCHLNE KYRVIEFVYE 120 HNHMTTSSSK THLFRSHKKI TYHIRSSWVM LNNTIIILNQ P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G268600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021817174.1	7e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251PRJ7	1e-117	A0A251PRJ7_PRUPE; Uncharacterized protein
TrEMBL	M5X103	1e-117	M5X103_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ15243	1e-118	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Prupe.4G268600.1.p
Entrez Gene	18780171