PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G247800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 339aa    MW: 37431.5 Da    PI: 4.8466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G247800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-142875148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
  Prupe.4G247800.1.p 28 KGLWSPEEDDKLMSYMINNGQGCWSDVARNAGLQRCGKSCRLRWINYL 75
                        678*******************************************97 PP
2Myb_DNA-binding52.31.3e-1681124146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
  Prupe.4G247800.1.p  81 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1272375IPR017930Myb domain
SuperFamilySSF466891.84E-2726122IPR009057Homeodomain-like
SMARTSM007177.1E-102777IPR001005SANT/Myb domain
PfamPF002493.5E-132875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-222982IPR009057Homeodomain-like
CDDcd001671.24E-83175No hitNo description
PROSITE profilePS5129425.91876130IPR017930Myb domain
SMARTSM007174.9E-1680128IPR001005SANT/Myb domain
PfamPF002492.1E-1581124IPR001005SANT/Myb domain
CDDcd001679.72E-1283123No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2683131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRKPDPSPAA AAAKNNNNNS NNTSKLRKGL WSPEEDDKLM SYMINNGQGC WSDVARNAGL  60
QRCGKSCRLR WINYLRPDLK RGAFSPQEEE LIIHLHSLLG NRWSQIAARL PGRTDNEIKN  120
FWNSTIKKRL KNLSSSNASP NTSDSSSEPK DHHAMLAGGF IPGQEHGMMP LYMDSSPSLM  180
QSTVLNHMFD PLPMLDHAGL TLPGGAGGYY NATQCTTQIN GVGGDCCFGD NGVFEVGGGV  240
DIGVEGEIFV PALECVSTED QNLKTEPIYD HRNTTNNNYY NNINSITNTN YNNNIKVENI  300
GVGNYYDDQE ELTMGEWDLE DLMKDVSSAS FPFLDYQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27261305108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G247800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416948.10.0transcription factor MYB46
TrEMBLA0A251PQH40.0A0A251PQH4_PRUPE; Uncharacterized protein
STRINGXP_008227297.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-61myb domain protein 83