PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G134200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 313aa    MW: 35440.4 Da    PI: 5.0675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G134200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.6e-07192236655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++ r RR++i ++ +eL +l+P        K++ ae+L+ A +++k+L+
  Prupe.4G134200.1.p 192 SIAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNFVKYLR 236
                         67889******************95.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.78E-8184239No hitNo description
PROSITE profilePS5088812.125186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10186245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9189241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-8192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-4192235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALSSFSNPE MVPPQSFGSV MTNFFQPNIE AELLAAEELL KYYQLDYNRS ILPNNLFLDD  60
HPCHDPYNLV NLENYHLDTT SDDHLFLPHL TTPDMFPQLD FYSHPYPKRQ KCFQDFVYPE  120
FTPATFYDAF PPDSCPLPEL LPAPGVFATP LLTFNQHLEE TVTDSNKSKV NDYEIGFTAK  180
KKVEEKCVSA QSIAARERRR KITEKTQELG KLVPGGSKMN TAEMLTAAYN FVKYLRAQVG  240
ILEFMGSFQE LKGAPPAEEL QVVAFPIIQE KLYLKNNCLV PEKFVEILAK HFDAQSKPSL  300
SNNLHQLLTS SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179200KKKVEEKCVSAQSIAARERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G134200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417804.10.0transcription factor bHLH52
TrEMBLA0A251PK040.0A0A251PK04_PRUPE; Uncharacterized protein
STRINGXP_008226193.11e-160(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.18e-27bHLH family protein