PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G100400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 286aa MW: 31948.2 Da PI: 4.5161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 168 | 212 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P a +K++ ae+L+ A +Y+k Lq Prupe.4G100400.1.p 168 SIAARERRRRITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFLQ 212 677899******************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.703 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 166 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-11 | 166 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-7 | 168 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-9 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.14E-5 | 178 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MMSSFCPADD WGSLQFLNPD MNMVSFQAQQ EQLAAASGIL GLQDYSLPNL PDYTTCIDPL 60 FETYESSSSE NFLLPDFYLP TENINLSSFQ SPEIFPSLDE YGCSYQQNPK RQKFGVCSFF 120 NAYDDQFLQP QLLAPTPSPQ TQIPQQPSYE CAKMNKPNGG AVTLSAQSIA ARERRRRITE 180 KTQELGRLIP GATKMNTAEM LQAAYKYVKF LQAQVSVLKL MTDSPVHQEK KDLQAVASPI 240 VQEKLYAEEK CLVSKEFVQV LANDHDIESK PLLKDSVAQL LQTNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G100400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225759.1 | 0.0 | PREDICTED: transcription factor bHLH52 | ||||
TrEMBL | A0A251PIA6 | 0.0 | A0A251PIA6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225759.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 5e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G100400.1.p |