PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G077700.1.p
Common NamePRUPE_ppa022905mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23807.9 Da    PI: 8.4894
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G077700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-141761145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        krie +    v+fskRr gi KKA+ + +LC+ eva++ifs++ k
  Prupe.4G077700.1.p 17 KRIEKEDDLLVSFSKRRSGISKKASDMVTLCGGEVAIVIFSPSSK 61
                        6889999999*******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.278969IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-19968IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-231098IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-151131IPR002100Transcription factor, MADS-box
PfamPF003193.3E-171865IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-153146IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-154667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASEGKKTRG RQRIEMKRIE KEDDLLVSFS KRRSGISKKA SDMVTLCGGE VAIVIFSPSS  60
KPFSFGHPSI DVVINRFLNR NPLENNEHTH QIMEVHRNMR IADLIQLFNE LLIQLEALKE  120
QSKLLEKISK TRGNNQEFWW NASLDELDVN ELKQTYASMA ELHMTITNHL KERRNAFDAS  180
SSSAQQTNPN FDTNPSGLGS YAFPPSYGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G077700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214680.11e-156agamous-like MADS-box protein AGL62
TrEMBLM5WQA41e-155M5WQA4_PRUPE; Uncharacterized protein
STRINGEMJ158791e-155(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-43AGAMOUS-like 62