PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G042500.1.p | ||||||||
Common Name | PRUPE_ppa020903mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 30732 Da PI: 8.7035 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.5 | 9.5e-36 | 42 | 100 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + + lkcprC+stntkfCyynny+ +qPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Prupe.4G042500.1.p 42 QPEPLKCPRCESTNTKFCYYNNYNKQQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRL 100 56889***********************************************9776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-23 | 43 | 94 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-31 | 45 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.149 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGLSTKQVSS DGLDWSQASL LQGQTFQLPK SPSAMRRQQQ QQPEPLKCPR CESTNTKFCY 60 YNNYNKQQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRL KKSSNSTSAS AAATTTTTNS 120 AAIDQTDHQQ QKPMSQVFYQ ALPQQNLDNT IIFSSSSSPG LSASTLPFLH QSGNLSFPFS 180 SSISTTSSSF DTNLSSISTS LQSSNVYNYA TVAAEDQFKA MEEPTITSIM PNISQPNWKV 240 PTSSNAMDVY SNDWNWEDIE TLVSTDLNLP WDGSDIKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G042500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007213508.1 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | M5WLN6 | 0.0 | M5WLN6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ14707 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07640.1 | 1e-27 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G042500.1.p |
Entrez Gene | 18778897 |