PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G030900.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 431aa MW: 46131 Da PI: 6.7866

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G030900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	322	359	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Prupe.4G030900.1.p 322 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 359 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-6	320	364	No hit	No description
SuperFamily	SSF47459	7.72E-12	320	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-9	324	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHIGSFGC PNDMVDIKAS RSSCGFDHSS 60 SPSSTPSDLN QALLLSRSGG GRAESNFHNS MLQEGVGVDE DSSSLIDGFK PMSQDFSLDQ 120 LGSSSSSGFP ITSSSSAANS YGFPSTLLQS IFDSEVSQPQ PQQSLFNNNH FSNDLLLPPS 180 PTSSCWPPRY SSSSCLRPSA VSLPKQLQPG GGGGGLHFPN NINTPFWNTP AATALNHGNS 240 IRSSNGLFSS SQSQYTAPAS SALVHEHKPN SHNFTPKGNT NEDVQDSNSV VKKSGSSMSS 300 CEPVFKRARI ETPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH 360 EQVSVLSTPY MKNGAPMQHQ QGSDHKMKEA EGAKHDLKSR GLCLVPISST FPVANETTDF 420 WTPTFGATFR *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHIGSFGC PNDMVDIKAS RSSCGFDHSS  60
SPSSTPSDLN QALLLSRSGG GRAESNFHNS MLQEGVGVDE DSSSLIDGFK PMSQDFSLDQ  120
LGSSSSSGFP ITSSSSAANS YGFPSTLLQS IFDSEVSQPQ PQQSLFNNNH FSNDLLLPPS  180
PTSSCWPPRY SSSSCLRPSA VSLPKQLQPG GGGGGLHFPN NINTPFWNTP AATALNHGNS  240
IRSSNGLFSS SQSQYTAPAS SALVHEHKPN SHNFTPKGNT NEDVQDSNSV VKKSGSSMSS  300
CEPVFKRARI ETPSPLPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH EAIEYIKFLH  360
EQVSVLSTPY MKNGAPMQHQ QGSDHKMKEA EGAKHDLKSR GLCLVPISST FPVANETTDF  420
WTPTFGATFR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G030900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020418827.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A0A251PF02	0.0	A0A251PF02_PRUPE; Uncharacterized protein
STRING	XP_008224893.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G030900.1.p