PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G004200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YB | ||||||||
Protein Properties | Length: 255aa MW: 29775.9 Da PI: 9.1915 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 106.8 | 1.4e-33 | 107 | 184 | 13 | 97 |
NF-YB 13 vsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++ +mkk lP+nakiskdaketvq f t+eas kc+rekrktingddllwa++ lGf++yveplk+yl+k+re+egek Prupe.4G004200.1.p 107 LQTMMKKGLPGNAKISKDAKETVQY-------FTTGEASGKCRREKRKTINGDDLLWAMTRLGFKEYVEPLKIYLHKFREMEGEK 184 6789*******************94.......99*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 9.8E-10 | 106 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.82E-23 | 107 | 189 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.6E-29 | 108 | 207 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 5.4E-9 | 141 | 159 | No hit | No description |
PRINTS | PR00615 | 5.4E-9 | 160 | 178 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDHQKKRGYR PKWATTKFKC EINLIFLFFY THSLWMDHGI IDVWLVPCNY EMKLKGCSSP 60 PPPHQIIYIS LTRTTTREQE EEEEEEKRIT QDLHHPQRDS TTGFYRLQTM MKKGLPGNAK 120 ISKDAKETVQ YFTTGEASGK CRREKRKTIN GDDLLWAMTR LGFKEYVEPL KIYLHKFREM 180 EGEKTAGTGM ARQLLYADHH PHEYHDQRQR EQLQHLHAPG MNMYGGMMMG HQRHHQGQGH 240 HPYLYGSGSG PSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-24 | 110 | 179 | 21 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G004200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | O23310 | 2e-36 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A251PDQ1 | 0.0 | A0A251PDQ1_PRUPE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-38 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G004200.1.p |
Publications ? help Back to Top | |||
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