PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G041800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 527aa    MW: 59104.8 Da    PI: 8.9363
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G041800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.4e-25241285145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Prupe.3G041800.1.p 241 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 285
                         79****************************************985 PP
2QLQ54.82.8e-19177210235
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                         +FT++Q+q+L++Q+l++Ky+a++ P+P +L+  +
  Prupe.3G041800.1.p 177 PFTPNQWQELEHQALIFKYMASGIPIPTDLVYSL 210
                         9*****************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-10176212IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.875177212IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-14177208IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.325241285IPR014977WRC domain
PfamPF088795.5E-21242284IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDFCRVEIER QERQQGAAIL CQWDLSVRPT HVGPCSGHTW AHTHVSNAQG QLQSRSRVAV  60
IIRADSVSQT ECTEKRESVF RGSQEPLVHP CIKEACNPLN NQLNKKQTHF SVSLKSPKLF  120
FLNPSSSCFS SPGYFEGLLI LCFVFFFFFY INLFCLKNHK KKKMLSGNPN TARNRYPFTP  180
NQWQELEHQA LIFKYMASGI PIPTDLVYSL KRRLDNSISS RLFPHPMGWG CYEMGFGRKV  240
DPEPGRCRRT DGKKWRCSKE AYPDSKYCER HMHRGRNRSR KPVEVSSSTT TPSATTTATE  300
HPSSSSSSAL SSPNNKNLSK TSSYSLSPLS SSISTETQTQ HNPHQSNSPL YPFLNYPQSS  360
SSSSRPPPGS VFSPQNNSSS ATPHLFLNSG SYNTQAEKDY RYLHGTKGSV DELTFFPESS  420
ANGRSILTGG SSSCQPLMSS YRGYSQPQFQ SLTDHHNPEV SQQSQEEEQH CFVWGTDFKS  480
GRAIKTEKEA AETQKSLHHF FGDWQPPKST DTWLDLSSNS GVPNDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G041800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700702e-98KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214861.20.0growth-regulating factor 5
TrEMBLA0A251PV710.0A0A251PV71_PRUPE; Uncharacterized protein
STRINGEMJ160600.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-59growth-regulating factor 5