PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G205700.1.p

Common Name

PRUPE_ppa016651mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 360aa MW: 39340.2 Da PI: 8.1444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G205700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Prupe.2G205700.1.p 141 YECKTCNRTFPSFQALGGHRASH 163 99**********99999998887 PP
2	zf-C2H2	13	0.00031	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Prupe.2G205700.1.p 231 HECSICGAEFTSGQALGGHMRRH 253 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.68E-9	140	163	No hit	No description
Pfam	PF13912	6.3E-13	140	165	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.637	141	168	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	141	163	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	143	163	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.68E-9	226	253	No hit	No description
Pfam	PF13912	5.4E-13	230	255	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	231	253	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.034	231	258	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGCKEQHHNN IIIKGKRTKR LRPQSPIPFA IPTTSSSPED GGGGDGGGEN DYINSATNLS 60 PTTSVEFQDS TTEEEEDMAN CLILLAKGQS RAASSSPSHH HHQPHNDHNT TSRRFLEATT 120 AVGPTGAKAG AVAAGGGYHA YECKTCNRTF PSFQALGGHR ASHKKPKANT GDDQKNKHFA 180 IGLLPSDEED TQLFKNSILH NNNNTSSSPL SLHLSNRGLV LSSNKSSSKV HECSICGAEF 240 TSGQALGGHM RRHRAPAAAN TTLALTAPSV SAFEPQQHQN QHQQQQPIKK QRSVLSLDLD 300 LNLPAPEDDH HKESKFVFAT SKQQQQQQQQ QQQQQQQQQQ QQQQQPERLR TQILVDCHY*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGCKEQHHNN IIIKGKRTKR LRPQSPIPFA IPTTSSSPED GGGGDGGGEN DYINSATNLS  60
PTTSVEFQDS TTEEEEDMAN CLILLAKGQS RAASSSPSHH HHQPHNDHNT TSRRFLEATT  120
AVGPTGAKAG AVAAGGGYHA YECKTCNRTF PSFQALGGHR ASHKKPKANT GDDQKNKHFA  180
IGLLPSDEED TQLFKNSILH NNNNTSSSPL SLHLSNRGLV LSSNKSSSKV HECSICGAEF  240
TSGQALGGHM RRHRAPAAAN TTLALTAPSV SAFEPQQHQN QHQQQQPIKK QRSVLSLDLD  300
LNLPAPEDDH HKESKFVFAT SKQQQQQQQQ QQQQQQQQQQ QQQQQPERLR TQILVDCHY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G205700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007219175.2	0.0	zinc finger protein ZAT5
TrEMBL	M5X354	0.0	M5X354_PRUPE; Uncharacterized protein
STRING	EMJ20374	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-51	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Prupe.2G205700.1.p
Entrez Gene	18786671