PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G048400.1.p | ||||||||
Common Name | PRUPE_ppa024496mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 36067.5 Da PI: 5.6538 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Prupe.2G048400.1.p 146 FTCNFCKREFSTSQALGGHQNAH 168 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-6 | 143 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 144 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.531 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MAEEPRVEHL SPTSEASNIS ATSDDLPPTK KDGLENLDRK MKEKIVIDDS DDDDTQQPPP 60 PPVISSSSSP SPSSRLRLDL KLCNNESAHG LGSSSSRLEL SLFNPSNLGS SNPGSSNPVS 120 EYSQPNETTD ENPRGSDDKR SQPRVFTCNF CKREFSTSQA LGGHQNAHKQ ERALAKRRQG 180 GLENMGGVLG HSPFPYYNPY SSLSSPSLYG SFNRSLGVRM DSMIHKPSYP WSSTLGFGRF 240 GPSSEAWSSR AGSLLNFQST IDRLNLDGLH ANAPNGISGL PGTSSASRFD KEIGVVGNFG 300 GSSSNSEINR PILGDLPREP PTSDTDAAGL DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G048400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219780.1 | 0.0 | zinc finger protein 6 | ||||
TrEMBL | M5X4Y3 | 0.0 | M5X4Y3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20979 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 5e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G048400.1.p |
Entrez Gene | 18787359 |