PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G432800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 362aa    MW: 39629.1 Da    PI: 6.0939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G432800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16168214455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Prupe.1G432800.1.p 168 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 214
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-20161224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-21161224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-17167218No hitNo description
PfamPF000108.8E-14168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-18170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSDLYGTAPD SEEISNILSQ LLHGHGSSAS SSSSCMPFKP TYTHLPHSSV APNHATTSEV  60
LILETRHEDY HRFARSEDRR VADGNSAAAV VESSSGFDFT DSGGYFQAEV KEGMESDANT  120
SLKGRRISSE NDLGDFSYDS EKGHDRSEVP LNPAPPRSLS KRSRAAEVHN MSEKRRRSRI  180
NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML TMKNGLSLHP MCLPGVMQPM  240
QLPHMGLGLE EGSNKFPKSS RGISPFYESE ENPMQSAFNI SPGCTISNQP MVLPSVANVP  300
TSEATFGFEP SIQALYRPFS VPSSSKELFR DGEPQAKLDT SETGKNSSSH VDILSTKRPD  360
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G432800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647805.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLA0A251REL50.0A0A251REL5_PRUPE; Uncharacterized protein
STRINGXP_008220349.10.0(Prunus mume)
STRINGEMJ261130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-45bHLH family protein