PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G391400.1.p | ||||||||
Common Name | PRUPE_ppa024819mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARR-B | ||||||||
Protein Properties | Length: 663aa MW: 73070 Da PI: 6.5123 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.2 | 3.7e-28 | 205 | 258 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Prupe.1G391400.1.p 205 KPRVVWSLELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 258 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77 | 6.7e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ ++ll +l++ +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + Prupe.1G391400.1.p 20 VLAVDDDPICLKLLDALLRRCKY-HVTTTSQAIMALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKG 108 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l + Prupe.1G391400.1.p 109 ITHGACDYLLKPVRIEQLKN 128 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-168 | 1 | 662 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-41 | 17 | 153 | No hit | No description |
SuperFamily | SSF52172 | 8.54E-35 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 7.7E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.372 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.6E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.98E-27 | 21 | 134 | No hit | No description |
PROSITE profile | PS51294 | 11.849 | 202 | 261 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-19 | 202 | 262 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-30 | 203 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-25 | 205 | 258 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-6 | 207 | 257 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MTVEGVLDEP RDQFPIGMRV LAVDDDPICL KLLDALLRRC KYHVTTTSQA IMALKLLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP 120 VRIEQLKNIW QHVIRRKKVD SKDQNSCNQE KSHAGNGEGG PGSAGTGNSD QNAKLNKKRK 180 DQDEDEDDDR DEDGHDNDDP STQKKPRVVW SLELHRKFVA AVNQLGIDKA VPKKILDLMN 240 VEKLTRENVA SHLQKYRLYL KRISRVANQQ ANMVAALGTS DSSYLQMTSV NGVGNFHPLT 300 GPGQFHNNAF RSFPPSGMVG RLNTPAGLGL HCLPSSGMFQ LSHAQNPSNS INDQPLIFPG 360 NRNGNILPAP LELDQQHGTE AACVADFSAA VNGTTVYPTS SGLPDAKVFN SSNDALGLAD 420 NPILRHTRDS EVGRNYVNQS SVSRASLRSE LSPPFLDHGR LNDNWSSASQ PSMFCSNSFS 480 SRDSFKQATL LQSNLKDNMP VMSSQIGSSQ IDVSISCQSQ DSRFGLPIQA SAISNNSGQT 540 INNDPFQGWD DHKPDSQYPS DVMCTSMNSL MPVNDTVAPF DQNSDSRRTS FQRNMGFNSI 600 GQSNFLDPLL MKYDNVEPTQ DASLKMRPGY LMDQRKLQGG YNPNNVGSLD ELVSAMMKQE 660 RR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-26 | 201 | 264 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 265 | RLYLKRISRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G391400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007226815.2 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | A2X1N2 | 1e-142 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A251RA03 | 0.0 | A0A251RA03_PRUPE; Two-component response regulator | ||||
STRING | EMJ28014 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-131 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G391400.1.p |
Entrez Gene | 18793837 |