PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G331600.1.p

Common Name

PRUPE_ppa004950mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 485aa MW: 53162.1 Da PI: 6.0993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G331600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+sF++ ++ +H t+ Prupe.1G331600.1.p 124 YECPICGQSFRSEDEVSVHVDTC 146 99*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	7.4E-10	19	61	No hit	No description
PROSITE profile	PS50157	8.974	124	153	IPR007087	Zinc finger, C2H2
CDD	cd09212	4.08E-20	178	273	No hit	No description
SuperFamily	SSF143503	5.49E-18	188	262	IPR018997	PUB domain
SMART	SM00580	7.0E-20	191	258	IPR018997	PUB domain
Pfam	PF09409	5.0E-16	192	265	IPR018997	PUB domain
SuperFamily	SSF54236	3.36E-12	338	451	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	7.4E-10	355	449	No hit	No description
PROSITE profile	PS50033	11.083	367	451	IPR001012	UBX domain
Pfam	PF00789	1.7E-5	369	418	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN 60 SNSSSSAASP NPKPSPQKTQ NLDQNKPEFS NNSKPNRKEN GFDPFDSLIT PGKRSQNGYT 120 LNVYECPICG QSFRSEDEVS VHVDTCVNTS VDNKSAEGLG VSGSEDIGVG SSRSELEARI 180 GTFASGNPAT GSVEVVLRLL RNIVKEPENV KFRKIRMSNP KIREAIGEVV GGIELLEFVG 240 FELKEEEGEM WAMMEVPSEE QISLMKNGIA LLEPPKVQEL QKIENSPSID TPKVDEQIEP 300 KKVDRQTKVF FSVSESVAAR IELPESFYNL SAMELKREAE TRKKKIEDSQ MLIPRSYKEK 360 QAKAAKNRYR RTVVRIQFPD GVVLQGVFSP WESTSSLYEY VSSALKEPSL EFELLNPVAI 420 KRRVIPHFPR AGEKAATLAD EDLVPSALVK FKPIETDSVV FTGLCNELLE ISEPLTSGSA 480 VAPV*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN  60
SNSSSSAASP NPKPSPQKTQ NLDQNKPEFS NNSKPNRKEN GFDPFDSLIT PGKRSQNGYT  120
LNVYECPICG QSFRSEDEVS VHVDTCVNTS VDNKSAEGLG VSGSEDIGVG SSRSELEARI  180
GTFASGNPAT GSVEVVLRLL RNIVKEPENV KFRKIRMSNP KIREAIGEVV GGIELLEFVG  240
FELKEEEGEM WAMMEVPSEE QISLMKNGIA LLEPPKVQEL QKIENSPSID TPKVDEQIEP  300
KKVDRQTKVF FSVSESVAAR IELPESFYNL SAMELKREAE TRKKKIEDSQ MLIPRSYKEK  360
QAKAAKNRYR RTVVRIQFPD GVVLQGVFSP WESTSSLYEY VSSALKEPSL EFELLNPVAI  420
KRRVIPHFPR AGEKAATLAD EDLVPSALVK FKPIETDSVV FTGLCNELLE ISEPLTSGSA  480
VAPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	1e-11	322	451	23	146	Tether containing UBX domain for GLUT4
5ifs_C	1e-11	322	451	23	146	Tether containing UBX domain for GLUT4
5ifw_A	4e-12	322	451	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G331600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007222657.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-172	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	M5XEF8	0.0	M5XEF8_PRUPE; Uncharacterized protein
STRING	EMJ23856	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Link Out ? help Back to Top
Phytozome	Prupe.1G331600.1.p
Entrez Gene	18789691

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]