PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G276600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 351aa    MW: 39416.7 Da    PI: 7.5308
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G276600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.2e-21953145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  Prupe.1G276600.1.p  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53
                        689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.941153IPR002100Transcription factor, MADS-box
CDDcd002663.42E-25282No hitNo description
SuperFamilySSF554555.62E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLTNQ  120
SRLLQTQLSE IKKRLSCWSS PDKITSVEQL GQMEDSVRES LNQIRANKEN LQKQQLMSLE  180
CTSQFQNGLH IPFSMGAEQQ LQPLSWIPTN ESRHMVLPED PNLLPHRDME CSASSSFGSY  240
SGYLGTGKSS EISTSGQENG ILNDLSRTAP LRLQLGGQFP YLPYNLNMLT DTKFQPPAEM  300
SPQENPVEYH VNGSFEAPRP EFYPTQHSWA STSGPCAVTM FDEHLYSQSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-13192190MEF2 CHIMERA
6byy_B2e-13192190MEF2 CHIMERA
6byy_C2e-13192190MEF2 CHIMERA
6byy_D2e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G276600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411234.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_020411235.10.0agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-121AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A251R5630.0A0A251R563_PRUPE; Uncharacterized protein
STRINGEMJ288470.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-110AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]