PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G048600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 201aa    MW: 21439.8 Da    PI: 4.489
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G048600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.3e-18959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ++ienk  r vtfs+Rrng++KKA+  S L +  va++++s+ g+ y+y+s
  Prupe.1G048600.1.p  9 EKIENKQSRAVTFSRRRNGLFKKAKDFSNLSGSSVAILVISPAGRRYTYAS 59
                        57***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.815161IPR002100Transcription factor, MADS-box
SMARTSM004328.6E-26160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-23171IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGKKKIAIEK IENKQSRAVT FSRRRNGLFK KAKDFSNLSG SSVAILVISP AGRRYTYASP  60
SFDSVVDQFL SETIDGSSTV TAGSSSFDYV DDQFLPTTNA GSTSVDSMVD QFISTTAASP  120
SYDPVIDEFL STAIGSPSVD PTADQIVPIA TVGSSTATPS GSFQDTLKAL SDVNIEACND  180
LEELMTLKNN LEQIIRERRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A6e-153681883PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B6e-153681883PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G048600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226837.21e-143MADS-box protein FLOWERING LOCUS C isoform X1
TrEMBLA0A251QSL41e-141A0A251QSL4_PRUPE; MADS-box protein 24
STRINGXP_008224041.11e-125(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-15AGAMOUS-like 29