PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G034100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 330aa    MW: 36798.1 Da    PI: 9.4035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G034100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015144166123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++ F++   L  H+++H
  Prupe.1G034100.1.p 144 YTCSFCKREFRSAQALGGHMNVH 166
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-6141170No hitNo description
SMARTSM003550.0038144166IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-6144168IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24144171IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAFTEALISL SLSLSLSLSL SDSKPNTPSS PFFSAWRVRN LFLDIFFQYD LGLFSRQLIY  60
IYWLVRISSF PSSALARLLC LDLLDRVKPA DKSEHTRMEK NRLSNNLKEH GRAIRDSNNK  120
RIIHCSQSCE EDYINGFSWP PRSYTCSFCK REFRSAQALG GHMNVHRKDR ARLKNSPPID  180
AQYTSTIFNL NLNLKPNPNP NFLSTSSPSS SSSLVSPFSS SLSLPSLISP PLPPHPPPIF  240
SVPSSENMKW VVGGTLFNHP LNLKASDLSS KLKGAKSLCG VGQEDQDGCI KTLKKAADPR  300
QILRLDLEIG MFGDTNKEDL DLELRLGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-14139166229superman protein
2l1o_A4e-14139166229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G034100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226157.11e-169transcriptional regulator SUPERMAN
TrEMBLA0A251QV450.0A0A251QV45_PRUPE; Uncharacterized protein
STRINGEMJ273561e-169(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-23C2H2 family protein