PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_15220V3.1.p
Common NamePHYPADRAFT_168958
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 1206aa    MW: 130083 Da    PI: 7.1048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_15220V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-101436527
                       --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                        Cr++a +GtC +Gd+C+FaH p
  Pp3c6_15220V3.1.p 14 TCRYWATSGTCFFGDQCNFAHNP 36
                       7********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.366937IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-51036IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-61238IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-71436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-81538IPR000571Zinc finger, CCCH-type
HamapMF_0318125.0635231175IPR030844PAB-dependent poly(A)-specific ribonuclease subunit PAN3
PROSITE profilePS500119.2347971104IPR000719Protein kinase domain
CDDcd001804.17E-10807955No hitNo description
SuperFamilySSF561121.06E-128091027IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.206.5E-4813872No hitNo description
Gene3DG3DSA:1.10.510.104.6E-6873968No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shortening
GO:0006397Biological ProcessmRNA processing
GO:0006468Biological Processprotein phosphorylation
GO:0031251Cellular ComponentPAN complex
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0044822Molecular Functionpoly(A) RNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 1206 aa     Download sequence    Send to blast
MSASPHKPPP SNVTCRYWAT SGTCFFGDQC NFAHNPADRA ASGRSVPKRE KACKELLLTG  60
YCKLVFQNEK NGCEYNHEIP GVIRAGPPSA SSSTTTNVAA SPVFSSWPST TSTTLSPGRT  120
AAAIRNNRLP VSAPAFVPAA VAAAQRASLS AWGGVTPGSG KRTAVTSQTT LTSTSPTQND  180
IISVSSGQTS VDAQTTSDLA ALVQKAEVRI APVTVSSGVS VSTPLSSTFS NSLLNAQPFI  240
PSLSSANSGS SNGPTQGASV GSANATPFVP SGGSVASAIS AAPFIPRSRQ HLVTGATTGG  300
VPASIDRALQ PANQSLVALD GSVPQQQLQM RQQLSPQMQQ QIQHQAAAQA QVQAQAQAQA  360
QAQAQMLAAA ARSMGGNVLN NNQYVGMEVP MVIPSFRLPD GDDPALGMTA MSPPNPAFLA  420
RVGGSGDLSV LPPSDAMTSM GIVGDESGVL QVDSSSPFAH NYGGGLPSLS FVRAQLHQHM  480
QNLQLQQQHQ VFSGQSSLYS LRPPQRTGAQ TPEKQQQQQM LSTQSEQQSQ SPPYSLRVSQ  540
SLGAQTAEKS LFLGSQAEGS GFVPSSLALL SEKQVQEHMS PSPERQESDQ LSMQSSESNG  600
PQQSTQQSGQ IQNSQQQSSL EQHHHQQQVQ IQQHLQLQAL QQQQMRHRMQ QQSHQSQQSQ  660
QPQHFQQQAQ GQRTLSGTGY SQQRLPSMRS ASPVSGVSTV AAATHGGATY FLGPGQGISS  720
LSHAFSSPNS RNESRSARSQ FPAGTAPLGS RFISDQLREE LRRRHTLIHA QLDPEQDLVD  780
LPEMVQRFHS LYPLEDVNRD DDIPSTSFGV RTMVFKGISS LDGQAYAIRR IDGRQVIPTV  840
ELAATAIEAV ERWAPFTRHP HIVAIRESFV SREVEDTPAL FFVHDYYPAA YTLQSMHLQQ  900
EQAGGVVHLT VSEEQLWSYM VQLATVLRAV HGAGLYFRPG GLHPSKIIVT SKGRIRVSSV  960
GILDVLHGDP ADEVRVFQKE DLAGCGRLVL ALACGSTANA SLEFMGSHYS NEIVRVTQHL  1020
LASSPEKSEG VGFSNIRQLH SFLADRMFSE IENVHMQNDE IMTELSKEAE NGRLLRILVK  1080
LGMMNERPET DMDPGWSENG DRYLLKLFRD FVFHQTSEEG TPVIDWGHVI ECLNKLDAGV  1140
PEKLILLSRD ERSMLIASYA DLKRCLENVY QELLARASGD KGRVALPQSM LVQSQARLSQ  1200
RLHAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bwp_A3e-7475511799448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
4bwp_B3e-7475511799448PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.170770.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378269.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378270.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378271.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378272.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378273.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378274.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
RefseqXP_024378275.10.0PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
TrEMBLA0A2K1KFQ30.0A0A2K1KFQ3_PHYPA; PAN2-PAN3 deadenylation complex subunit PAN3
STRINGPP1S195_2V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1336134
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]