PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_17700V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 604aa    MW: 64387.4 Da    PI: 6.9829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_17700V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.8e-07419440223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  Pp3c4_17700V3.1.p 419 FCEICGKGFKRDANLRMHMRGH 440
                        6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-5415442No hitNo description
PROSITE profilePS5015712.113418445IPR007087Zinc finger, C2H2
SMARTSM003550.0026418440IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280420440IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5420444IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355250468501IPR015880Zinc finger, C2H2-like
SMARTSM0035561506528IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MQGASQQQSS SPSNDSLLTF AFLGQHLRQF SNTVPLHPHQ NQLLQSLPLD FALGVNAQEQ  60
AQAHQNHRSH SQLVPIGGSG GGGIRSGDRM GEMLQHLQHG NMASNFDQLQ FSSQLMNSNF  120
SENLSCQSTV DQNVQTIMEH LSMLQERISQ LQALVPLISH TAHSQIEGNT VAQQQAASAA  180
VVSIISQLAM VAIGLLPQSF ENSGGQGNQS AELPLSQLLQ ASVGQQSNFF QQDTVGEPLR  240
APQRCSSLGT SMGNNFGTPA EVVSGVGAGV NSSVLSDNCG LRFPSGGTSF PGLNSDGDLT  300
GPQNLSGQPS AGRGSSGTLL QNQICSGGGK DLGSVAGGGK RRRVANKDSN LLDNSLAAGT  360
NTFISNELGG VSGGLENLDT ESRSDDDSDG DGDGENIIPG SFDLVEMNAS EILAEHTHFC  420
EICGKGFKRD ANLRMHMRGH GDEYKTPAAL ARPDKDYPDT SATRLRRYSC PCVGCKRNKE  480
HRKFQPLKTM LCVKNHYRRS HCPKVLTCQK CMTKKFSVVA DLKTHEKHCG RERWQCSCGT  540
TFSRKDKLFG HINLFAGHTP VVVVMQESEA GGGGGGNSAQ DNQGSPNSGS FGSENNASRR  600
FFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339343KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176031e-124protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373732.10.0uncharacterized protein LOC112281445
RefseqXP_024373733.10.0uncharacterized protein LOC112281445
RefseqXP_024373734.10.0uncharacterized protein LOC112281445
RefseqXP_024373735.10.0uncharacterized protein LOC112281445
RefseqXP_024373736.10.0uncharacterized protein LOC112281445
RefseqXP_024373737.10.0uncharacterized protein LOC112281445
TrEMBLA0A2K1KNZ40.0A0A2K1KNZ4_PHYPA; Uncharacterized protein
STRINGPP1S13_145V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-91C2H2 family protein