PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_21050V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26640.9 Da PI: 5.6561 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ F+ + L H+++H Pp3c3_21050V3.1.p 57 FECRFCDMKFPKSQALGGHMNRH 79 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.1E-5 | 54 | 84 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MMFNNNNNRD SQYTTASNSS VPPTQQNQAV VYLNSGDGDE DNPNRRRKPE EDSENKFECR 60 FCDMKFPKSQ ALGGHMNRHR VEREQEEIQK ARNLLIAQQL PPPYYAGAQY YSRMDGASTS 120 VDPTGNFPST GGSFMTPQLP FYQPQAQSSV QNWLGNQITR PMERPSEAAE TSVHLRGNSS 180 RSQHTQSELP PRSTQFTQSE PTPRSTQFTR SEPQSNWLQA TQHSDSDVDG LEYIN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371541.1 | 1e-176 | zinc finger protein JAGGED-like isoform X1 | ||||
TrEMBL | A0A2K1KVD2 | 1e-174 | A0A2K1KVD2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S47_285V6.1 | 1e-124 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3955 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 4e-09 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_21050V3.1.p |