PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_6080V3.2.p
Common NameHDT1501, PHYPADRAFT_158891
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 377aa    MW: 40096.4 Da    PI: 4.0378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_6080V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05351374123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ykC+ C+++F++ s + +H    H
  Pp3c2_6080V3.2.p 351 YKCTGCDRTFTTESAMSQHVAAkH 374
                       9******************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.741351376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-4351375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025351374IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLAASTGVLL FSSDIRLLFF SSAAMEFWGV EVRAGKPTQC SPGEGMYLHV SQAALGESKA  60
KGGKGSERVV LKVHVDGSDI VLGTLAEGRC DQMPLDLVFD SDFSVSHSSS SSSIFLCGYR  120
TEGPREYDSE DEDEEEDEED EDEEDAGVPV AVPIKANGAA AEMLSKVTDK AAAAVANAIA  180
KGIEKKVVKK QVIQDDSSDE EDDSEDSDDS DEDDGMGHPF VSDLASESDD EFDAGDDDSD  240
EDMDEDDDDD DDDEDDEDDE SEEEELKIET PKAGKKRPAA EPLKVADKKS KTDSSPLQAA  300
AAKGTKGEKQ VTPSKDAPKT PTDKGAKAKA PKGTPTAPPT TPVSEKKFGQ YKCTGCDRTF  360
TTESAMSQHV AAKHKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.35200.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368863.10.0histone deacetylase HDT2-like isoform X1
TrEMBLA9RGA10.0A9RGA1_PHYPA; HD2 type histone deacetylase
STRINGPP1S7_389V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-11histone deacetylase 3
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]