PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_8710V3.1.p | ||||||||
Common Name | PHYPADRAFT_160146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 428aa MW: 47242.9 Da PI: 6.8213 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.2e-12 | 201 | 242 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW +e+ +l+++a +q+G++ +++I + ++ gRt+kq+ks++ + Pp3c18_8710V3.1.p 201 RWKQEDTDLFYKALEQFGTD-FELIQNLFP-GRTRKQVKSKFKN 242 9*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.4E-29 | 192 | 277 | No hit | No description |
PROSITE profile | PS51293 | 9.735 | 197 | 248 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-9 | 198 | 246 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-7 | 198 | 242 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-10 | 200 | 248 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-8 | 201 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MADEEAVATA EEADGDEECE DMARNQPLES EPPVSVLKKA RPIGAARKRK IVHRTRSGKR 60 KDVETKTVSL KKMKEAVSMD LSDPSQLTMK EIIRRAEAIE RAKAREEAAK KGKGKDKKGA 120 GTTTASKDRN TPADQDMPAQ SASILTPQVT IVNGRIVINQ QSLVVGAQAS TREDTNTYQR 180 VEEDRPKLNY NSYSNRTPVE RWKQEDTDLF YKALEQFGTD FELIQNLFPG RTRKQVKSKF 240 KNEERLNPLR LSDALGHKTQ DQSHHYRAIL EMIKTEKPAA DSDEMLLESL LQPVVTDERA 300 SDQPLQTQAS TSGDKVHAED NVDVAMNTVV LDKVKPDDVT APASELIDST AAVLPQSEVE 360 TITVKDDPPA SEAPETLSSH QNKSKASGNP LGSYGKEPLS KNPRGSYGNM SRNPLGSYKK 420 NPLGMYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cnb_S | 1e-14 | 153 | 288 | 369 | 504 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
6cnc_S | 1e-14 | 153 | 288 | 369 | 504 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
6cnd_S | 1e-14 | 153 | 288 | 369 | 504 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
6cnf_S | 1e-14 | 153 | 288 | 369 | 504 | Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'' |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401733.1 | 0.0 | transcription factor TFIIIB component B''-like | ||||
TrEMBL | A0A2K1J0E1 | 0.0 | A0A2K1J0E1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S19_81V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8075 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.2 | 2e-22 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_8710V3.1.p |
Entrez Gene | 5918882 |
Publications ? help Back to Top | |||
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