PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19630V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 1032aa    MW: 112159 Da    PI: 6.6877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19630V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-16169227357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c10_19630V3.4.p 169 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 227
                         5678******************************9999*******************97 PP
2START1541.3e-483565613203
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                         aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W e+++++e+l ++ +g  g++
  Pp3c10_19630V3.4.p 356 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAG-KVTEVLKDRPAWLEDCRRMEVLGALPTGnrGTI 445
                         78999****************************************************.8888888888*********************** PP

                         EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
               START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                         +l +++++a ++l+p Rd+ ++Ry+  l++g +vi+++S++  q+ p+    +s+vR+e++pSg+li+p+++g++ +++v+h d + ++++
  Pp3c10_19630V3.4.p 446 ELLYTQMYASTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQNGPSmppVQSFVRGEMFPSGYLIRPCDGGGCIIHVVDHYDNGPWSVP 536
                         ********************************************999988899************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 179 wllrslvksglaegaktwvatlqrq 203
                         ++lr+l++s ++ +++ + a+l+++
  Pp3c10_19630V3.4.p 537 EVLRPLYESPAVLAQRSTIAALRHL 561
                         *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-18149227IPR009057Homeodomain-like
PROSITE profilePS5007115.467164228IPR001356Homeobox domain
SuperFamilySSF466896.42E-16165231IPR009057Homeodomain-like
SMARTSM003897.2E-14166232IPR001356Homeobox domain
CDDcd000862.27E-15169229No hitNo description
PfamPF000463.3E-14170227IPR001356Homeobox domain
CDDcd146860.00125221257No hitNo description
PROSITE profilePS5084821.835345545IPR002913START domain
CDDcd088752.63E-76349565No hitNo description
SMARTSM002341.9E-37354564IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-20355559IPR023393START-like domain
SuperFamilySSF559612.31E-35356565No hitNo description
PfamPF018525.1E-46356561IPR002913START domain
PfamPF086703.1E-448871029IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MGGSGGEQAG RQEESRGGGG DKNESVRRIC FMGAMPCHRD IGPILHGAYT FRQPSALGLG  60
LRLFCGMNQT LGCAFVCAWS LVHLLSSTPF PPCSPFSKPR YYTPIRLDVI YGTPSSAAVN  120
SDELNLALAH YATRNSAAGD CNPTTAPLQP SARTMTESWK EQTMDSSGKY VRYTNEQVEA  180
LERVYHECPK PSSIRRHQLI KESPILANIE PKQIKVWFQN RRCREKQRKE ATRLVSVNAK  240
LTALNKLLME ENERLAKHAS QLTLENHSLR QQLPSLPLTN GTHRLSSQNL LKKERAVNGG  300
DESSTQGGIC VKLHGQAGVA STDTSCDSAV TGGLPHHLTP RHSPRYTSPA GLLATAEETL  360
TEFLAKATGT AVDWIQLPGM KPGPDAIGII AISHGCVGIA ARACGLVALD AGKVTEVLKD  420
RPAWLEDCRR MEVLGALPTG NRGTIELLYT QMYASTTLAP ARDYCTLRYT TILEDGNLVI  480
CERSLTGGQN GPSMPPVQSF VRGEMFPSGY LIRPCDGGGC IIHVVDHYDN GPWSVPEVLR  540
PLYESPAVLA QRSTIAALRH LRRLAAEESG EGNPRNGQHP AVLRTLGQRL AKGFKNAVNG  600
FADDGWVSTV SDGLDDVSVI LNATSQSMEG QIASDKLLYS LGGGILCAKA SMLLQNVPPS  660
ILIKFLREHR SEWADYDMDA NLATSFRSNG NGYAPQGGGV SHVQLPLPLP NSGEHGEILE  720
VVKLEDHSSV QHMVISRDSF LLQLCSGIDE NAVGASAQLI FAPVDVALTE DIPLLPSGFC  780
ISPVDANVLD EFDLDHTLDL ASTLEGGSDL RLNGDSKSNG TSSHMRSVLT IAFQFAYEVH  840
SHEACAVMAR QYLRTVVSSV QRVAMALAPS RGSAPPRQMS ANPDALSLAR HVLRSYRLHL  900
GLDLTRSENG GDETLFKAFW HHTDAILCCA WKGKPEFVFA NRSGLEMFET TTSSLQELDW  960
DKTLNESDCK LSYATFTQVL QQGYCSLPAG VRMSSSGRTA TYERALVWKV VDDNETVECI  1020
AFLFINWSFV V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.99280.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572030.0DQ657203.1 Physcomitrella patens class III HD-Zip protein HB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386782.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386783.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024386784.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4280.0Q0Q428_PHYPA; Class III HD-Zip protein HB13
STRINGPP1S67_107V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]