PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T062400.1
Common NamePOPTR_0007s10010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 239aa    MW: 25770.3 Da    PI: 7.6841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T062400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-312103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Ga+g++++++++++q
  Potri.T062400.1   2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVNPVNGAAGLLWTGNWHVCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  Potri.T062400.1  96 AAVETVLR 103
                      **998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.761107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PSLFQSLLFE ACGRTVNPVN GAAGLLWTGN WHVCQAAVET VLRGGTLQPM PELLTGGGGS  120
PSPSSDEASE VEVACTDIWK LQDPNPNHHP RFSISRSRLS PKRKRTEEPV AVKVQHNDLD  180
LGLTPSFSLK GFPYKQQIRR PGTPSMNSAE SVTTNTACFD SAGLGDEGGE TKLLNLFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166PKRKRTE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T062400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142830.0AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380633.11e-177LOB domain-containing protein 38
RefseqXP_024460798.11e-177LOB domain-containing protein 38-like
SwissprotQ9SN233e-96LBD38_ARATH; LOB domain-containing protein 38
TrEMBLU5G4U01e-175U5G4U0_POPTR; LBD family protein
STRINGPOPTR_0007s10010.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-90LOB domain-containing protein 38